Showing posts with label Biology. Show all posts
Showing posts with label Biology. Show all posts

Friday, January 9, 2026

Why I Fell For Transcendental Meditation

We might consider yogic flying the crowning oddity of transcendental meditation (TM), a practice that promises higher states of consciousness as well as a happier, calmer, more productive daily life. The basics of TM are not particularly out there – a 15- to 20-minute meditation, twice a day, in which you silently repeat a mantra to yourself. But for those who want to take things to the next level, the “TM-Sidhi program” taught by the Maharishi Foundation (which runs the Peace Palace), allows meditators to go even deeper – culminating in what I witness in the men’s flying hall. And this is only the first of three stages of yogic flying (though it is the only one for which there is evidence of anyone managing to achieve). In the second stage, you briefly hover above the ground; in the third, you actually… move through the air.

It is a most curious ending to my three-night retreat at the Peace Palace, which I am undertaking having started to practise TM two months before.
 
I turn up to my first session at the Foundation’s London headquarters with a collection of items I have been asked to bring along – two pieces of sweet fruit, some freshly cut flowers, a new white handkerchief – and press the buzzer on which I find a little label: “TM – a simple effortless effective meditation for everyone.”

A bald Russian man opens the door, looking more finance bro than guru in smart jeans, a pink shirt and a black gilet. His name is Pavel Khokhlachev and he will be my teacher. An interpreter, he is also “the voice of Putin on Sky News”, he tells me. He brings me down into the basement, past a little shrine to Maharishi Mahesh Yogi, the man who brought TM to the west in the late 1950s (both the meditation technique itself and the yogic flying are ancient Vedic practices), and into a room containing a couple of chairs and an altar covered in a gold-trimmed white cloth. Above us looms a large picture of the Hindu monk Brahmananda Saraswati, more commonly referred to as Guru Dev, who was Maharishi’s teacher.

Khokhlachev begins by performing a little ceremony, which I am told to keep confidential, and I am given my mantra, which I am also told I must never share with anyone. The mantra is a Sanskrit sound that does not convey any meaning. It is allocated to me using a system that is kept secret but which also comes from India’s ancient Vedic religion. The idea is that repeating it will allow some reprieve from one’s mental chatter – Khokhlachev likens it to giving a puppy something to chew on so that it doesn’t chew up your furniture. We sit down on the chairs and I do my first meditation. Unlike in some other meditation practices, in TM you don’t need to sit up poker straight or in lotus position to practise; you just need to be comfortable. If you have an itch, you can scratch it. If you want to cross your legs around the other way, you can. Even if you find yourself thinking, that’s also fine; thoughts aren’t the enemy. Just “innocently return to the mantra”, Khokhlachev tells me. The idea is that it should all feel easy, simple, effortless. If it doesn’t, you’re doing something wrong.
 
Like many people, I was drawn to TM by David Lynch, the filmmaker and artist who would have turned 80 on 15 January (the one-year anniversary of his death is five days after that). Lynch practised TM for more than 50 years and devoted much of the last two decades of his life to promoting it, setting up his own foundation in 2005 to fund its teaching in schools and to at-risk populations around the world. 

Lynch’s passion notwithstanding, I have always suspected TM to be a bit of a cult. Even the fact that it’s abbreviated to TM has always felt a bit off to me, somehow. I was quite ready for this piece to be an exposé of what a scam the whole thing is.
 
But while I can’t say I immediately feel the same level of bliss that some describe during my first meditation, something does happen that takes me by surprise. Suddenly, it’s like I’ve fallen down a hole – a very nice, quiet, relaxing hole. And the strangest thing is that it feels somehow… familiar. It’s as if I have fallen asleep, and yet I am wide awake. Some people have described it as “falling awake”. I describe my experience to Khokhlachev, and he tells me it sounds like I transcended. I leave the centre feeling most pleased with myself.
 
Over the four days of consecutive sessions – the introductory course is priced between £295 and £725 depending on one’s earnings – we continue to discuss and refine my TM technique. After my first successful session, I find it harder to access the transcendent for the next few days but I’m told not to worry. “We should come to the meditation with no anticipation and no expectation,” Khokhlachev advises. “Don’t chase the transcendence, because then it’s not innocent.”

How is this form of meditation really different from any other? Bob Roth, CEO of the David Lynch Foundation, who has taught TM to Oprah Winfrey, Tom Hanks, Jerry Seinfeld and Sting, as well as many thousands of others, tells me that there are three different meditation techniques that all have measurably different effects on the brain. There’s focused attention, such as when you concentrate on your breath, which produces gamma waves such as you might see if you were solving a complex maths problem. Open monitoring, in which you observe your thoughts coming and going in a non-judgmental way, which generates calming theta brain waves, such as we experience just before we dream. And then there’s this one, “automatic self-transcending”, which produces “alpha coherence” – increased and synchronised activity across the brain. Scientists call this “restful alertness”; some TM practitioners call it “pure consciousness”. The idea is that it has a twofold effect: the lovely feeling of transcendence while you are in it, and then the extra energy, clarity and creativity you are left with. When you have a really good meditation, the time really flies.
 
Research has demonstrated that transcendental meditation specifically has strong positive effects on a whole range of conditions. In 2013, the American Heart Association formally recognised TM as a complementary technique for reducing blood pressure and cardiovascular risk, and noted its association with a reduced risk of heart attack, stroke and death in patients with heart disease. Other studies have shown TM significantly reduces anxiety and stress more effectively than other relaxation or meditation techniques, while long-term practitioners have been found to have increased cognitive clarity, memory and emotional resilience. 

After about a month of practising TM, I start finding it easier to “transcend” – I begin to reach that place most times that I do it (although not every time). I’m struck by how much more focused I am for several hours after meditating, and how much energy it gives me – meditating in the morning sets me up for the day; meditating in the afternoon feels a bit like having a nap, but more powerful and without the grogginess. It isn’t just a vague feeling, either: according to my Fitbit, during meditation my heart rate tends to drop a beat below its lowest rate during my nightly sleep.
 
I was not expecting any of this to happen. I have meditated before and found it helpful for reducing anxiety and putting things into perspective. But I haven’t ever found it transformational in this way. I have also always found doing it a bit of an effort – something I should be doing – whereas now, most of the time, I relish the chance to do it. Lynch said that he never missed a single one of his twice-daily sessions and, inspired by him, I have so far kept a clean record, though admittedly not always for the full 20 minutes. I would suggest, tentatively, that TM might be a gamechanger.

by Jemima Kelly, Financial Times/AT | Read more:
Image: Getty
[ed. I took up TM in the early 70s (but just an occasional practioner now). Everything described here is exactly how the TM experience feels. Highly recommended.]

Sunday, January 4, 2026

Target on Tongass

GRAVINA ISLAND, Tongass National Forest — Rain drips from the tips of branches of a grandmother cedar, growing for centuries. In verdant moss amid hip-high sword ferns, the bones of a salmon gleam, picked clean by feasting wildlife. “Gronk,” intones a raven, from somewhere high overhead in the forest canopy.

This is the Tongass National Forest, in Southeast Alaska. At nearly 17 million acres, it is the largest national forest in our country by far — and its wildest. These public lands are home to more grizzly bears, more wolves, more whales, more wild salmon than any other national forest. More calving glaciers; shining mountains and fjords; and pristine beaches, where intact ancient forests meet a black-green sea. These wonders drew more than 3 million visitors from around the nation and the world to Alaska from May 2024 through April 2025 — a record.

In the forest, looming Sitka spruce, western hemlock and cedars quill a lush understory of salal and huckleberry. Life grows upon life, with hanks of moss and lichen swaddling trunks and branches. Nothing really dies here, it just transforms into new life. Fallen logs are furred with tree seedlings, as a new generation rises. After they spawn, salmon die — and transubstantiate into the bodies of ravens, bears and wolves they nourish.


Strewn across thousands of islands, and comprising most of Southeast Alaska, the Tongass was designated a national forest by President Theodore Roosevelt in 1907. The trees here were coveted by the timber industry even before Alaska was a state, and industrial logging began in 1947 with construction of two pulp mills, each with a federally subsidized 50-year contract for public timber.

While the Tongass is big, only about 33% of it is forested in old and second growth, and clear-cuts disproportionately targeted the most productive areas with the biggest trees. In North Prince of Wales Island, notes Kate Glover, senior attorney for EarthJustice in Juneau, more than 77% of the original contiguous old growth was cut.

The logging boom that began in the 1950s is long since bust; the last pulp mill in Alaska shut in 1997. But now, the prospect of greatly increased cutting is once again ramping up.

President Donald Trump wants to revoke a federal rule that could potentially open more than 9 million acres of the Tongass to logging, including about 2.5 million acres of productive old growth. The Roadless Area Conservation Rule, widely known as the Roadless Rule, was adopted by President Bill Clinton in 2001 to protect the wildest public lands in our national forests, after an extensive public process. Trump revoked it during his first term of office. President Joe Biden reinstated it. Now Trump has announced plans to rescind it again.


“Once again, President Trump is removing absurd obstacles to common sense management of our natural resources by rescinding the overly restrictive roadless rule,” said Secretary of Agriculture Brooke Rollins, in a June announcement. “This move opens a new era of consistency and sustainability for our nation’s forests … to enjoy and reap the benefits of this great land.”

The Roadless Rule is one of the most important federal policies many people have never heard of, protecting nearly 45 million acres in national forests all over the country from logging, mining and other industrial development. In Washington state, the rule preserves about 2 million acres of national forest — magnificent redoubts of old growth and wildlife, such as the Dark Divide in the Gifford Pinchot National Forest.

The rule is popular. After Rollins announced the proposed rollback, more than 500,000 people posted comments defending it in just 21 days during an initial public comment period. Another public comment period will open in the spring.

At stake in the Tongass is one of the last, largest coastal temperate rainforests in the world. (...)

The Tongass also is home to more productive old-growth trees (older than 150 years) than any other national forest. And the biggest trees store the most carbon.

In a world in which wilderness is rapidly disappearing, “the best is right here,” DellaSala says. “If you punch in roads and log it, you lose it. You flip the system to a degraded state.

“What happens right now is what will make the difference in the Tongass.”

“Who knew this could happen?”

Revoking the Roadless Rule isn’t the only threat to the Tongass. It’s also being clear-cut, chunk by chunk, through land transfers, swaps and intergovernmental agreements affecting more than 88,000 acres just since 2014.

Joshua Wright bends low over a stump, counting its tightly packed rings. Certainly 500, maybe 700, it’s hard to tell in the driving rain. This stump he and DellaSala are standing on is as wide as they are tall. “Who knew this could happen?” says Wright, looking at the clear-cut, with nearly every tree taken, all the way to the beach fringe. So close to the beach, delicate domes of sea urchin shells sit amid the logging slash, as do abalone shells, dropped by seabirds, their shimmering opalescent colors so out of place in a bleak ruin of stumps.

This is representative of the type of logging that can happen when lands are removed from the national forest system, says Wright, who leads the Southeast Alaska program for the Legacy Forest Defense Coalition, based in Tacoma. More such cuts could be coming. Legislation proposed last summer would privatize more than 115,000 acres of the Tongass.

The legislation is part of a yearslong effort since 1985 to wrest more of the Tongass from federal control to private, for-profit Native corporations. In 1971, a federal land claims settlement act transferred 44 million acres of federal land to regional and village corporations owned by Alaska Native shareholders.

Five communities that were not included in that 1971 settlement would receive land under the so-called landless legislation, though none of them met the original criteria for eligibility. Native people in these communities were made at-large/landless shareholders, with payments to them managed by Sealaska Corporation, which owns and manages a range of for-profit businesses and investments throughout Southeast Alaska. (...)

Industrial scale clear-cut logging in the Tongass, in addition to its environmental destruction, has never made economic sense. U.S. taxpayers heavily subsidize the cutting, in part through the construction and maintenance of Forest Service roads to access the forest. A recent study done by the independent, nonpartisan group Taxpayers for Common Sense found that the Forest Service lost $16.1 million on Tongass timber sales in fiscal year 2019, and $1.7 billion over the past four decades. Most of Alaska’s timber harvest is exported as raw logs to Asian markets. (...)

Only about 240 people work in the logging business in Alaska today, most of them at two sawmills. The industry, states the Alaska Forest Association, an industry group, will collapse unless it is fed more old growth from public lands. The AFA made the claim in a lawsuit, joined with other plaintiffs, against the Forest Service, demanding release of more old-growth forest from the Tongass for cutting.

Booming business

But while the timber industry is fighting for a lifeline, more than 8,263 people work locally in a thriving tourism business built on wild and scenic Alaska. In 2023, tourism became the largest economic sector in Southeast, according to a 2024 report by Southeast Conference, the regional economic development organization.

Mary Catharine Martin, spokesperson for SalmonState, a nonprofit based in Juneau, notes that the Mendenhall Glacier Visitor Center at the Tongass National Forest is visited by about 700,000 people annually from all over the world. “This is what people come to see,” says Martin, regarding the glacier, its ice glowing blue as a husky’s eye. “They come to see this amazing place, and to be out in it.”

by Linda Mapes, Seattle Times |  Read more:
Image: Amy Gulick
[ed. They've been chipping away at the Tongass for decades. Trading old growth trees for pulp and chopsticks.]

Sunday, December 21, 2025

The Day the Dinosaurs Died

A young paleontologist may have discovered a record of the most significant event in the history of life on Earth. “It’s like finding the Holy Grail clutched in the bony fingers of Jimmy Hoffa, sitting on top of the Lost Ark."

If, on a certain evening about sixty-­six million years ago, you had stood somewhere in North America and looked up at the sky, you would have soon made out what appeared to be a star. If you watched for an hour or two, the star would have seemed to grow in brightness, although it barely moved. That’s because it was not a star but an asteroid, and it was headed directly for Earth at about forty-five thousand miles an hour. Sixty hours later, the asteroid hit. The air in front was compressed and violently heated, and it blasted a hole through the atmosphere, generating a supersonic shock wave. The asteroid struck a shallow sea where the Yucatán peninsula is today. In that moment, the Cretaceous period ended and the Paleogene period began.

A few years ago, scientists at Los Alamos National Laboratory used what was then one of the world’s most powerful computers, the so-called Q Machine, to model the effects of the impact. The result was a slow-motion, second-by-second false-color video of the event. Within two minutes of slamming into Earth, the asteroid, which was at least six miles wide, had gouged a crater about eighteen miles deep and lofted twenty-five trillion metric tons of debris into the atmosphere. Picture the splash of a pebble falling into pond water, but on a planetary scale. When Earth’s crust rebounded, a peak higher than Mt. Everest briefly rose up. The energy released was more than that of a billion Hiroshima bombs, but the blast looked nothing like a nuclear explosion, with its signature mushroom cloud. Instead, the initial blowout formed a “rooster tail,” a gigantic jet of molten material, which exited the atmosphere, some of it fanning out over North America. Much of the material was several times hotter than the surface of the sun, and it set fire to everything within a thousand miles. In addition, an inverted cone of liquefied, superheated rock rose, spread outward as countless red-hot blobs of glass, called tektites, and blanketed the Western Hemisphere.

Some of the ejecta escaped Earth’s gravitational pull and went into irregular orbits around the sun. Over millions of years, bits of it found their way to other planets and moons in the solar system. Mars was eventually strewn with the debris—just as pieces of Mars, knocked aloft by ancient asteroid impacts, have been found on Earth. A 2013 study in the journal Astrobiology estimated that tens of thousands of pounds of impact rubble may have landed on Titan, a moon of Saturn, and on Europa and Callisto, which orbit Jupiter—three satellites that scientists believe may have promising habitats for life. Mathematical models indicate that at least some of this vagabond debris still harbored living microbes. The asteroid may have sown life throughout the solar system, even as it ravaged life on Earth.

The asteroid was vaporized on impact. Its substance, mingling with vaporized Earth rock, formed a fiery plume, which reached halfway to the moon before collapsing in a pillar of incandescent dust. Computer models suggest that the atmosphere within fifteen hundred miles of ground zero became red hot from the debris storm, triggering gigantic forest fires. As the Earth rotated, the airborne material converged at the opposite side of the planet, where it fell and set fire to the entire Indian subcontinent. Measurements of the layer of ash and soot that eventually coated the Earth indicate that fires consumed about seventy per cent of the world’s forests. Meanwhile, giant tsunamis resulting from the impact churned across the Gulf of Mexico, tearing up coastlines, sometimes peeling up hundreds of feet of rock, pushing debris inland and then sucking it back out into deep water, leaving jumbled deposits that oilmen sometimes encounter in the course of deep-sea drilling.

The damage had only begun. Scientists still debate many of the details, which are derived from the computer models, and from field studies of the debris layer, knowledge of extinction rates, fossils and microfossils, and many other clues. But the over-all view is consistently grim. The dust and soot from the impact and the conflagrations prevented all sunlight from reaching the planet’s surface for months. Photosynthesis all but stopped, killing most of the plant life, extinguishing the phytoplankton in the oceans, and causing the amount of oxygen in the atmosphere to plummet. After the fires died down, Earth plunged into a period of cold, perhaps even a deep freeze. Earth’s two essential food chains, in the sea and on land, collapsed. About seventy-five per cent of all species went extinct. More than 99.9999 per cent of all living organisms on Earth died, and the carbon cycle came to a halt.

Earth itself became toxic. When the asteroid struck, it vaporized layers of limestone, releasing into the atmosphere a trillion tons of carbon dioxide, ten billion tons of methane, and a billion tons of carbon monoxide; all three are powerful greenhouse gases. The impact also vaporized anhydrite rock, which blasted ten trillion tons of sulfur compounds aloft. The sulfur combined with water to form sulfuric acid, which then fell as an acid rain that may have been potent enough to strip the leaves from any surviving plants and to leach the nutrients from the soil.

Today, the layer of debris, ash, and soot deposited by the asteroid strike is preserved in the Earth’s sediment as a stripe of black about the thickness of a notebook. This is called the KT boundary, because it marks the dividing line between the Cretaceous period and the Tertiary period. (The Tertiary has been redefined as the Paleogene, but the term “KT” persists.) Mysteries abound above and below the KT layer. In the late Cretaceous, widespread volcanoes spewed vast quantities of gas and dust into the atmosphere, and the air contained far higher levels of carbon dioxide than the air that we breathe now. The climate was tropical, and the planet was perhaps entirely free of ice. Yet scientists know very little about the animals and plants that were living at the time, and as a result they have been searching for fossil deposits as close to the KT boundary as possible.

One of the central mysteries of paleontology is the so-called “three-­metre problem.” In a century and a half of assiduous searching, almost no dinosaur remains have been found in the layers three metres, or about nine feet, below the KT boundary, a depth representing many thousands of years. Consequently, numerous paleontologists have argued that the dinosaurs were on the way to extinction long before the asteroid struck, owing perhaps to the volcanic eruptions and climate change. Other scientists have countered that the three-metre problem merely reflects how hard it is to find fossils. Sooner or later, they’ve contended, a scientist will discover dinosaurs much closer to the moment of destruction.

Locked in the KT boundary are the answers to our questions about one of the most significant events in the history of life on the planet. If one looks at the Earth as a kind of living organism, as many biologists do, you could say that it was shot by a bullet and almost died. Deciphering what happened on the day of destruction is crucial not only to solving the three-­metre problem but also to explaining our own genesis as a species.

On August 5, 2013, I received an e-mail from a graduate student named Robert DePalma. I had never met DePalma, but we had corresponded on paleontological matters for years, ever since he had read a novel I’d written that centered on the discovery of a fossilized Tyrannosaurus rex killed by the KT impact. “I have made an incredible and unprecedented discovery,” he wrote me, from a truck stop in Bowman, North Dakota. “It is extremely confidential and only three others know of it at the moment, all of them close colleagues.” He went on, “It is far more unique and far rarer than any simple dinosaur discovery. I would prefer not outlining the details via e-mail, if possible.” He gave me his cell-phone number and a time to call...

DePalma’s find was in the Hell Creek geological formation, which outcrops in parts of North Dakota, South Dakota, Montana, and Wyoming, and contains some of the most storied dinosaur beds in the world. At the time of the impact, the Hell Creek landscape consisted of steamy, subtropical lowlands and floodplains along the shores of an inland sea. The land teemed with life and the conditions were excellent for fossilization, with seasonal floods and meandering rivers that rapidly buried dead animals and plants.

Dinosaur hunters first discovered these rich fossil beds in the late nineteenth century. In 1902, Barnum Brown, a flamboyant dinosaur hunter who worked at the American Museum of Natural History, in New York, found the first Tyrannosaurus rex here, causing a worldwide sensation. One paleontologist estimated that in the Cretaceous period Hell Creek was so thick with T. rexes that they were like hyenas on the Serengeti. It was also home to triceratops and duckbills. (...)

Today, DePalma, now thirty-seven, is still working toward his Ph.D. He holds the unpaid position of curator of vertebrate paleontology at the Palm Beach Museum of Natural History, a nascent and struggling museum with no exhibition space. In 2012, while looking for a new pond deposit, he heard that a private collector had stumbled upon an unusual site on a cattle ranch near Bowman, North Dakota. (Much of the Hell Creek land is privately owned, and ranchers will sell digging rights to whoever will pay decent money, paleontologists and commercial fossil collectors alike.) The collector felt that the site, a three-foot-deep layer exposed at the surface, was a bust: it was packed with fish fossils, but they were so delicate that they crumbled into tiny flakes as soon as they met the air. The fish were encased in layers of damp, cracked mud and sand that had never solidified; it was so soft that it could be dug with a shovel or pulled apart by hand. In July, 2012, the collector showed DePalma the site and told him that he was welcome to it. (...)

The following July, DePalma returned to do a preliminary excavation of the site. “Almost right away, I saw it was unusual,” he told me. He began shovelling off the layers of soil above where he’d found the fish. This “overburden” is typically material that was deposited long after the specimen lived; there’s little in it to interest a paleontologist, and it is usually discarded. But as soon as DePalma started digging he noticed grayish-white specks in the layers which looked like grains of sand but which, under a hand lens, proved to be tiny spheres and elongated ­droplets. “I think, Holy shit, these look like microtektites!” DePalma recalled. Micro­tektites are the blobs of glass that form when molten rock is blasted into the air by an asteroid impact and falls back to Earth in a solidifying drizzle. The site appeared to contain micro­tektites by the million.

As DePalma carefully excavated the upper layers, he began uncovering an extraordinary array of fossils, exceedingly delicate but marvellously well preserved. “There’s amazing plant material in there, all interlaced and interlocked,” he recalled. “There are logjams of wood, fish pressed against cypress-­tree root bundles, tree trunks smeared with amber.” Most fossils end up being squashed flat by the pressure of the overlying stone, but here everything was three-dimensional, including the fish, having been encased in sediment all at once, which acted as a support. “You see skin, you see dorsal fins literally sticking straight up in the sediments, species new to science,” he said. As he dug, the momentousness of what he had come across slowly dawned on him. If the site was what he hoped, he had made the most important paleontological discovery of the new century.

by Douglas Preston, New Yorker |  Read more:
Image: Richard Barnes

Thursday, December 18, 2025

Finding Peter Putnam

The forgotten janitor who discovered the logic of the mind

The neighborhood was quiet. There was a chill in the air. The scent of Spanish moss hung from the cypress trees. Plumes of white smoke rose from the burning cane fields and stretched across the skies of Terrebonne Parish. The man swung a long leg over a bicycle frame and pedaled off down the street.

It was 1987 in Houma, Louisiana, and he was headed to the Department of Transportation, where he was working the night shift, sweeping floors and cleaning toilets. He was just picking up speed when a car came barreling toward him with a drunken swerve.

A screech shot down the corridor of East Main Street, echoed through the vacant lots, and rang out over the Bayou.

Then silence.
 
The 60-year-old man lying on the street, as far as anyone knew, was just a janitor hit by a drunk driver. There was no mention of it on the local news, no obituary in the morning paper. His name might have been Anonymous. But it wasn’t.

His name was Peter Putnam. He was a physicist who’d hung out with Albert Einstein, John Archibald Wheeler, and Niels Bohr, and two blocks from the crash, in his run-down apartment, where his partner, Claude, was startled by a screech, were thousands of typed pages containing a groundbreaking new theory of the mind.

“Only two or three times in my life have I met thinkers with insights so far reaching, a breadth of vision so great, and a mind so keen as Putnam’s,” Wheeler said in 1991. And Wheeler, who coined the terms “black hole” and “wormhole,” had worked alongside some of the greatest minds in science.

Robert Works Fuller, a physicist and former president of Oberlin College, who worked closely with Putnam in the 1960s, told me in 2012, “Putnam really should be regarded as one of the great philosophers of the 20th century. Yet he’s completely unknown.”

That word—unknown—it came to haunt me as I spent the next 12 years trying to find out why.

The American Philosophical Society Library in Philadelphia, with its marbled floors and chandeliered ceilings, is home to millions of rare books and manuscripts, including John Wheeler’s notebooks. I was there in 2012, fresh off writing a physics book that had left me with nagging questions about the strange relationship between observer and observed. Physics seemed to suggest that observers play some role in the nature of reality, yet who or what an observer is remained a stubborn mystery.

Wheeler, who made key contributions to nuclear physics, general relativity, and quantum gravity, had thought more about the observer’s role in the universe than anyone—if there was a clue to that mystery anywhere, I was convinced it was somewhere in his papers. That’s when I turned over a mylar overhead, the kind people used to lay on projectors, with the titles of two talks, as if given back-to-back at the same unnamed event:

Wheeler: From Reality to Consciousness

Putnam: From Consciousness to Reality

Putnam, it seemed, had been one of Wheeler’s students, whose opinion Wheeler held in exceptionally high regard. That was odd, because Wheeler’s students were known for becoming physics superstars, earning fame, prestige, and Nobel Prizes: Richard Feynman, Hugh Everett, and Kip Thorne.

Back home, a Google search yielded images of a very muscly, very orange man wearing a very small speedo. This, it turned out, was the wrong Peter Putnam. Eventually, I stumbled on a 1991 article in the Princeton Alumni Weekly newsletter called “Brilliant Enigma.” “Except for the barest outline,” the article read, “Putnam’s life is ‘veiled,’ in the words of Putnam’s lifelong friend and mentor, John Archibald Wheeler.

A quick search of old newspaper archives turned up an intriguing article from the Associated Press, published six years after Putnam’s death. “Peter Putnam lived in a remote bayou town in Louisiana, worked as a night watchman on a swing bridge [and] wrote philosophical essays,” the article said. “He also tripled the family fortune to about $40 million by investing successfully in risky stock ventures.”

The questions kept piling up. Forty million dollars?

I searched a while longer for any more information but came up empty-handed. But I couldn’t forget about Peter Putnam. His name played like a song stuck in my head. I decided to track down anyone who might have known him.

The only paper Putnam ever published was co-authored with Robert Fuller, so I flew from my home in Cambridge, Massachusetts, to Berkeley, California, to meet him. Fuller was nearing 80 years old but had an imposing presence and a booming voice. He sat across from me in his sun-drenched living room, seeming thrilled to talk about Putnam yet plagued by some palpable regret.

Putnam had developed a theory of the brain that “ranged over the whole of philosophy, from ethics to methodology to mathematical foundations to metaphysics,” Fuller told me. He compared Putnam’s work to Alan Turing’s and Kurt Gödel’s. “Turing, Gödel, and Putnam—they’re three peas in a pod,” Fuller said. “But one of them isn’t recognized.” (...)

Phillips Jones, a physicist who worked alongside Putnam in the early 1960s, told me over the phone, “We got the sense that what Einstein’s general theory was for physics, Peter’s model would be for the mind.”

Even Einstein himself was impressed with Putnam. At 19 years old, Putnam went to Einstein’s house to talk with him about Arthur Stanley Eddington, the British astrophysicist. (Eddington performed the key experiment that proved Einstein’s theory of gravity.) Putnam was obsessed with an allegory by Eddington about a fisherman and wanted to ask Einstein about it. Putnam also wanted Einstein to give a speech promoting world government to a political group he’d organized. Einstein—who was asked by plenty of people to do plenty of things—thought highly enough of Putnam to agree.

How could this genius, this Einstein of the mind, just vanish into obscurity? When I asked why, if Putnam was so important, no one has ever heard of him, everyone gave me the same answer: because he didn’t publish his work, and even if he had, no one would have understood it.

“He spoke and wrote in ‘Putnamese,’ ” Fuller said. “If you can find his papers, I think you’ll immediately see what I mean.” (...)

Skimming through the papers I saw that the people I’d spoken to hadn’t been kidding about the Putnamese. “To bring the felt under mathematical categories involves building a type of mathematical framework within which latent colliding heuristics can be exhibited as of a common goal function,” I read, before dropping the paper with a sigh. Each one went on like that for hundreds of pages at a time, on none of which did he apparently bother to stop and explain what the whole thing was really about...

Putnam spent most of his time alone, Fuller had told me. “Because of this isolation, he developed a way of expressing himself in which he uses words, phrases, concepts, in weird ways, peculiar to himself. The thing would be totally incomprehensible to anyone.” (...)


Imagine a fisherman who’s exploring the life of the ocean. He casts his net into the water, scoops up a bunch of fish, inspects his catch and shouts, “A-ha! I have made two great scientific discoveries. First, there are no fish smaller than two inches. Second, all fish have gills.”

The fisherman’s first “discovery” is clearly an error. It’s not that there are no fish smaller than two inches, it’s that the holes in his net are two inches in diameter. But the second discovery seems to be genuine—a fact about the fish, not the net.

This was the Eddington allegory that obsessed Putnam.

When physicists study the world, how can they tell which of their findings are features of the world and which are features of their net? How do we, as observers, disentangle the subjective aspects of our minds from the objective facts of the universe? Eddington suspected that one couldn’t know anything about the fish until one knew the structure of the net.

That’s what Putnam set out to do: come up with a description of the net, a model of “the structure of thought,” as he put it in a 1948 diary entry.

At the time, scientists were abuzz with a new way of thinking about thinking. Alan Turing had worked out an abstract model of computation, which quickly led not only to the invention of physical computers but also to the idea that perhaps the brain, too, was a kind of Turing machine.

Putnam disagreed. “Man is a species of computer of fundamentally different genus than those she builds,” he wrote. It was a radical claim (not only for the mixed genders): He wasn’t saying that the mind isn’t a computer, he was saying it was an entirely different kind of computer.

A universal Turing machine is a powerful thing, capable of computing anything that can be computed by an algorithm. But Putnam saw that it had its limitations. A Turing machine, by design, performs deductive logic—logic where the answers to a problem are contained in its premises, where the rules of inference are pregiven, and information is never created, only shuffled around. Induction, on the other hand, is the process by which we come up with the premises and rules in the first place. “Could there be some indirect way to model or orient the induction process, as we do deductions?” Putnam asked.

Putnam laid out the dynamics of what he called a universal “general purpose heuristic”—which we might call an “induction machine,” or more to the point, a mind—borrowing from the mathematics of game theory, which was thick in the air at Princeton. His induction “game” was simple enough. He imagined a system (immersed in an environment) that could make one mutually exclusive “move” at a time. The system is composed of a massive number of units, each of which can switch between one of two states. They all act in parallel, switching, say, “on” and “off” in response to one another. Putnam imagined that these binary units could condition one another’s behavior, so if one caused another to turn on (or off) in the past, it would become more likely to do so in the future. To play the game, the rule is this: The first chain of binary units, linked together by conditioned reflexes, to form a self-reinforcing loop emits a move on behalf of the system.

Every game needs a goal. In a Turing machine, goals are imposed from the outside. For true induction, the process itself should create its own goals. And there was a key constraint: Putnam realized that the dynamics he had in mind would only work mathematically if the system had just one goal governing all its behavior.

That’s when it hit him: The goal is to repeat. Repetition isn’t a goal that has to be programmed in from the outside; it’s baked into the very nature of things—to exist from one moment to the next is to repeat your existence. “This goal function,” Putnam wrote, “appears pre-encoded in the nature of being itself.”

So, here’s the game. The system starts out in a random mix of “on” and “off” states. Its goal is to repeat that state—to stay the same. But in each turn, a perturbation from the environment moves through the system, flipping states, and the system has to emit the right sequence of moves (by forming the right self-reinforcing loops) to alter the environment in such a way that it will perturb the system back to its original state.

Putnam’s remarkable claim was that simply by playing this game, the system will learn; its sequences of moves will become increasingly less random. It will create rules for how to behave in a given situation, then automatically root out logical contradictions among those rules, resolving them into better ones. And here’s the weird thing: It’s a game that can never be won. The system never exactly repeats. But in trying to, it does something better. It adapts. It innovates. It performs induction.

In paper after paper, Putnam attempted to show how his induction game plays out in the human brain, with motor behaviors serving as the mutually exclusive “moves” and neurons as the parallel binary units that link up into loops to move the body. The point wasn’t to give a realistic picture of how a messy, anatomical brain works any more than an abstract Turing machine describes the workings of an iMac. It was not a biochemical description, but a logical one—a “brain calculus,” Putnam called it.

As the game is played, perturbations from outside—photons hitting the retina, hunger signals rising from the gut—require the brain to emit the right sequence of movements to return to its prior state. At first it has no idea what to do—each disturbance is a neural impulse moving through the brain in search of a pathway out, and it will take the first loop it can find. That’s why a newborn’s movements start out as random thrashes. But when those movements don’t satisfy the goal, the disturbance builds and spreads through the brain, feeling for new pathways, trying loop after loop, thrash after thrash, until it hits on one that does the trick.

When a successful move, discovered by sheer accident, quiets a perturbation, it gets wired into the brain as a behavioral rule. Once formed, applying the rule is a matter of deduction: The brain outputs the right move without having to try all the wrong ones first.

But the real magic happens when a contradiction arises, when two previously successful rules, called up in parallel, compete to move the body in mutually exclusive ways. A hungry baby, needing to find its mother’s breast, simultaneously fires up two loops, conditioned in from its history: “when hungry, turn to the left” and “when hungry, turn to the right.” Deductive logic grinds to a halt; the facilitation of either loop, neurally speaking, inhibits the other. Their horns lock. The neural activity has no viable pathway out. The brain can’t follow through with a wired-in plan—it has to create a new one.

How? By bringing in new variables that reshape the original loops into a new pathway, one that doesn’t negate either of the original rules, but clarifies which to use when. As the baby grows hungrier, activity spreads through the brain, searching its history for anything that can break the tie. If it can’t find it in the brain, it will automatically search the environment, thrash by thrash. The mathematics of game theory, Putnam said, guarantee that, since the original rules were in service of one and the same goal, an answer, logically speaking, can always be found.

In this case, the baby’s brain finds a key variable: When “turn left” worked, the neural signal created by the warmth of the mother’s breast against the baby’s left cheek got wired in with the behavior. When “turn right” worked, the right cheek was warm. That extra bit of sensory signal is enough to tip the scales. The brain has forged a new loop, a more general rule: “When hungry, turn in the direction of the warmer cheek.”

New universals lead to new motor sequences, which allow new interactions with the world, which dredge up new contradictions, which force new resolutions, and so on up the ladder of ever-more intelligent behavior. “This constitutes a theory of the induction process,” Putnam wrote.

In notebooks, in secret, using language only he would understand, Putnam mapped out the dynamics of a system that could perceive, learn, think, and create ideas through induction—a computer that could program itself, then find contradictions among its programs and wrangle them into better programs, building itself out of its history of interactions with the world. Just as Turing had worked out an abstract, universal model of the very possibility of computation, Putnam worked out an abstract, universal model of the very possibility of mind. It was a model, he wrote, that “presents a basic overall pattern [or] character of thought in causal terms for the first time.”

Putnam had said you can’t understand another person until you know what fight they’re in, what contradiction they’re working through. I saw before me two stories, equally true: Putnam was a genius who worked out a new logic of the mind. And Putnam was a janitor who died unknown. The only way to resolve a contradiction, he said, is to find the auxiliary variables that forge a pathway to a larger story, one that includes and clarifies both truths. The variables for this contradiction? Putnam’s mother and money.

by Amanda Gefter, Nautilus |  Read more:
Image: John Archibald Wheeler, courtesy of Alison Lahnston.
[ed. Fascinating. Sounds like part quantum physics and part AI. But it's beyond me.]

Tuesday, November 25, 2025

An Incredible Privilege and a Daunting Task

Darkness had fallen and the tide was rolling in, lapping at the heels of the team of people who were quickly disassembling the big whale, piece by piece, bone by bone.

The young humpback, 26 feet long and 20,000 pounds in all (roughly the size of a small school bus), had become entangled in crabbing gear and had beached itself along the central Oregon coast over the weekend. After two days of efforts to save the whale failed, it was euthanized. After that, it was up to the Siletz tribe to take the whale carcass apart.

Lisa Norton, who works as the chief administrative officer for the Confederated Tribes of Siletz Indians and who is also an experienced elk hunter, helped organize the harvest and has been speaking on behalf of the team who worked for nearly 12 hours on the beach Tuesday.

This was the first time in generations that the Siletz tribe has harvested a whale, she said. Nobody in the tribe had ever done it before, and nobody could remember the last time it happened. Ancestors of some of the 30 bands that make up the tribe were prolific whalers, but those cultural practices had long been suppressed by the U.S. government. The Siletz tribe has only recently regained its fishing and hunting rights (the tribe still needed a special permit to harvest the humpback).

“We recognized the importance of what could be with this,” Norton said. “I prefer to think of it as a once-in-a-lifetime opportunity that we can learn from.”

It was also an enormous undertaking.

“Exhausting would be an understatement,” she said.

The young humpback whale came ashore north of Yachats on Saturday afternoon. Over the next 48 hours, people flocked to the beach to help the still-living whale, despite urges from the Oregon Marine Mammal Stranding Network not to do so. Online, thousands watched a livestream of the event, pouring out their sympathies for the animal in Facebook comments.

Meanwhile, 50 miles up the coast, Siletz tribal members were gathered at the Chinook Winds Casino Resort for the tribe’s annual Restoration Powwow, which celebrates the restoration of the tribe’s federal recognition in 1977. Word about the whale spread around the powwow, where some prayed and danced for the whale, Norton said.

On Monday, when it was clear the humpback would not survive and would ultimately need to be euthanized, Oregon State Police (who had previously worked with Siletz hunters) reached out to the tribe about the possibility of harvesting the animal. The tribe rushed to secure the proper permits and assembled a team of hunters to take apart the whale.

“What an incredible privilege and a daunting task,” Norton said. “The folks that stood up and said ‘We could do this’ were very brave. And what they did was a very important piece to the next chapter of this whale.” (...)

Before anyone cut into the animal, they smudged and prayed over its body. They honored the animal for its sacrifice. They offered thanks to the bounty it provided. They asked Creator to guide their hands.

“That is what you do,” Norton said. “As experienced hunters we always give thanks to what has been provided.”

Some members of the team had stayed up late Monday night, researching the bone structure of humpback whales, which parts should be taken, how to cut into the animal. Once on the beach, they also relied on their own instinct as hunters. But the whale was very different from an elk, Norton said, and not just because it was 30 times as big.

The team already knew that unlike the tribe’s ancestors, they wouldn’t harvest any meat from the whale. Since the animal had been chemically sedated and euthanized, everyone was concerned the meat wouldn’t be safe for human consumption. But there was still plenty to harvest. The team took all the whale’s blubber, thousands of pounds of it, as well as virtually all its bones. They also separated the head so they could later harvest the baleen, the keratin structure that helps the whale filter feed in the ocean.

As they worked into the night, the tribe got a helping hand from Tru-North Construction, local contractors who were on site with heavy equipment. The contractors used an excavator to dig a trench for the whale meat and organs that wouldn’t be used and helped maneuver the animal around for the team of harvesters. The company also provided a flatbed truck so tribal members wouldn’t have to transport the blubber and bones in their own cars — a godsend, Norton said. (...)

When the sun rose over the beach the next morning, the spot where people had spent days trying to save the dying whale was now a mess of meat and skin — food for the foragers that would clean it all up.

To some, it may seem like a gruesome end to a tragic story, Norton said, but for the tribe it was a heartfelt experience that honored the life so many had tried to save.

“As we were processing and collecting these materials, folks were telling us the stories of how strong this whale was,” Norton said. “That story will stay with each of those pieces that are then put back out in the world.”

The tribe has not yet decided what, exactly, they’re going to do with the animal parts. They plan to render the blubber down to oil, but they’re first going to check to make sure it isn’t toxic. Whale bones have historically been used to make tools or art, which are possibilities, Norton said, and baleen can be used to decorate regalia. One elder told her that a large whale vertebra makes a nice stool, but she said it probably wouldn’t go with her home décor.

“We anticipate that this process is going to continue for a year or two until it’s done,” Norton said.

by Jamie Hale, Seattle Times |  Read more:
Image: Mark Graves via
[ed. Fortunately this whale was relatively fresh - old bloated ones can be barf-inducing. I can only imagine the frantic discussions and conflicted feelings many tribal members felt when suddenly given this opportunity and told ' have at it'. The tension between ancestral obligations and long forgotten skills, between 'hunters' and googlers, logistics. Some might have never seen a whale before. Panic at the casino!]

Friday, November 21, 2025

I Taught an Octopus to Play Piano in 6 Months


via: YouTube
[ed. It's been said that if there are intelligent aliens on earth, octopuses are probably the best candidates. Too bad they're so tasty.]

Thursday, November 6, 2025

Getting Jacked Is Simple

It’s actually really simple to get jacked. That’s not to say it’s easy- just that the complexity of the challenge is trivial, requiring only time and energy to succeed.

Now, you’re probably raising your eyebrows at this claim. Everywhere you look, there are personal trainers, fitness influencers, nutritionists, and even exercise scientists with conflicting information. Go to any gym, and you’ll see different people doing wildly different exercise routines. Surely, that implies building muscle is a complicated subject? Well, no. For 2 reasons:

1. The fitness industry thrives on misinformation, because all the money is made in selling supplements, accessories, and ‘personal training expertise’ that have no scientific legitimacy

2. Most people are cognitive misers who actively avoid mentally demanding tasks and refuse to read anything academic

The result is a very large proportion of fitness enthusiasts have essentially no idea what they’re doing, and even the somewhat knowledgeable ones are still full of misinformation. So, how do we cut through the noise?

Getting Jacked

Think of getting jacked as something like this formula:

GettingJacked = Time * (0.6x + 0.3y + 0.1z)

X is your adherence to primary concepts, y is your adherence to secondary concepts, and z is your adherence to tertiary concepts. Primary and secondary concepts are a collection of just a handful of relatively simple ideas that require little financial investment. If you just focused on these, you would find getting jacked to be relatively straightforward. But tertiary concepts, predominantly supplements, are innumerable, complex, and require tons of money.

The entire fitness industry is built around obfuscation such that the tertiary concepts can be promoted and sold. And it works wonderfully for making money- but terribly for our motivation to actually get into the gym and train properly.
The paradox of choice is a concept introduced by psychologist Barry Schwartz which suggests that the more options we have, the less satisfied we feel with our decision. This phenomenon occurs because having too many choices requires more cognitive effort, leading to decision fatigue and increased regret over our choices.
The sheer amount of conflicting information out there certainly makes it difficult to know who to listen to, but it also actively discourages people from getting into fitness at all. And even if you were able to expertly navigate this whole industry of tertiary concepts to find the absolute optimal program, that would still represent just 10% of your results! Nearly everyone should be ignoring Z entirely and instead focusing their efforts on the simple stuff in X and Y.

But what is this simple stuff, you might be wondering? Fortunately, unlike in decades past, we no longer have to rely on the ‘bro-science’ of anecdotes and dubiously extrapolated study conclusions. On the contrary, in the age of information we now have robust research data on what actually matters for getting jacked.

Primary Concepts (60% of Results)

1. Progressive Overload

The most important concept is progressive overloading, which is simply increasing your weight resistance over time as your body adapts. Muscle growth is a continuous cycle: the body adapts to a given stress, and to continue improving, that stress (e.g., weight, reps, sets) must be gradually increased, forcing the body to adapt again. No matter what exercises you’re doing, or for how long, or with what intensity, the most important thing is that you need to constantly be increasing the challenge. Going to the gym every week for 3 years curling the same 20lb dumbbell isn’t going to do anything. But if you’re curling 30lb at the end of year 1, 40lb at the end of year 2, and 50lb at the end of year 3, guess what- you’re getting jacked.

2. Train to Failure (1 RIR)

You also need to be really pushing yourself hard in the gym, because it’s specifically the last few reps right before your muscles fail that seem to drive results. Modern studies have consistently shown that training to 1 rep-in-reserve (RIR)- continuing a set until you have only enough strength left to complete 1 more final rep- maximizes strength gains and muscular hypertrophy while limiting risk of injury. Basically, keep lifting until you have doubts about whether or not you can complete another rep. If you can squat 100lb for 10 reps, for 3 sets in a row, then that first set was almost certainly not being trained to 1 RIR. What those 3 sets should look like is something like 10 reps, 8 reps, 6 reps- despite you giving it maximum effort on every set. This indicates that you were indeed pushing yourself close to failure and fatiguing yourself in the process.

3. Consume Sufficient Protein

It’s a trope that gym bros are obsessed with protein, but this is for good reason. Muscle growth cannot occur without sufficient protein. And relatively high amounts of protein are required in order to optimize muscle growth. Studies suggest increasing protein has a significant impact on muscle growth up to about 1.6-2.2g/kg (0.7-1g/lb) of body weight with substantially diminishing returns after that. The International Society of Sports Nutrition currently suggests consuming a slightly lower range of 1.4-2.0 g/kg. In other words, if you’re hitting anywhere close to 1g/lb of body weight of daily protein, you’re getting the full benefits. It doesn’t matter much where the protein comes from, though great sources include grilled chicken, Greek yogurt, and protein powder. It also doesn’t matter much how you split this protein up throughout the day, though there is some evidence that protein intake of no more than 40g per meal is optimal. But, in general, just focus on hitting the absolute numbers and the rest will follow.

4. Abs are made in the gym, and revealed in the kitchen

The final basic concept is that nobody can admire your muscle if you’re fat.9 Building muscle mass is step 1, but step 2 is cutting down to a low enough body fat to reveal that muscle. Overall appearance even at the same leanness can vary depending on individual skeletal structure, body fat distribution, and muscle mass- but nonetheless this is what fairly muscular men and women look like at various body fat percentages.


The American Council on Exercise (ACE) has the following classifications for body fat %.


Today’s beauty standards for ‘jacked’ tends to fall somewhere around 12% for men and 20% for women- just making it into the ‘athletes’ category. Most amateur fitness enthusiasts dramatically overestimate how lean they actually are. At 12% body fat for men, you should be seeing:
  • Defined abs visible when flexed, with a noticeable “V-cut” above the hips
  • Clear separation between muscle groups, such as rear delts to side delts
  • Increased vascularity with prominent and visible veins on the arms and shoulders
  • Sharper facial features, particularly noticeable around the jawline

And at 20% body fat for women:
  • Muscle definition pops when flexed, particularly in shoulders and quads
  • Flat stomach (but without sharply segmented abs)
  • Little excess fat, mostly in hips, thighs, and buttocks- with a smaller waist
  • Sharper facial features, noticeable around the jawline and cheekbones
Secondary Concepts (30% of Results)

If you’re following the above concepts perfectly, it literally does not matter what else you will do- you will get jacked. But if you really want to optimize your routine, here are a few other concepts to consider.

by Dylan, Chaotic Neutral |  Read more:
Image: uncredited

Sunday, October 19, 2025

David Littschwager, Seawater sample
via:

Biologists Announce There Absolutely Nothing We Can Learn From Clams


WOODS HOLE, MA—Saying they saw no conceivable reason to bother with the bivalve mollusks, biologists at the Woods Hole Oceanographic Institution announced Thursday that there was absolutely nothing to be learned from clams. “Our studies have found that while some of their shells look pretty cool, clams really don’t have anything to teach us,” said the organization’s chief scientist, Francis Dawkins, clarifying that it wasn’t simply the case that researchers had already learned everything they could from clams, but rather that there had never been anything to learn from them and never would be. “We certainly can’t teach them anything. It’s not like you can train them to run through a maze the way you would with mice. We’ve tried, and they pretty much just lie there. From what I’ve observed, they have a lot more in common with rocks than they do with us. They’re technically alive, I guess, if you want to call that living. They open and close sometimes, but, I mean, so does a wallet. If you’ve used a wallet, you know more or less all there is to know about clams. Pretty boring.” The finding follows a study conducted by marine biologists last summer that concluded clams don’t have much flavor, either, tasting pretty much the same as everything else on a fried seafood platter.

by The Onion |  Read more:
Image: uncredited

Monday, October 13, 2025

Monsters From the Deep



I get that the news cycle is packed right now, but I just heard from a colleague at the Smithsonian that this is fully a GIANT SQUID BEING EATEN BY A SPERM WHALE and it’s possibly the first ever confirmed video according to a friend at NOAA ~ Rebecca R. Helm
***
"From the darkness of the deep, the mother rose slowly, her great body pulsing with effort, while the calf clung close to her side. The faint shimmer of the surface light caught on something twisting in her jaws—long pale arms, still trembling, a giant calamari dragged from the black abyss.

The calf pressed its head against the mother’s flank, curious, its small eye turning toward the strange, sprawling catch. Around them, the other whales gathered, a circle of giants, each click and creak of their voices carrying through the water like an ancient council.

The mother released a cloud of ink the squid had left behind, now dissipating in ghostly ribbons. She let the prey dangle for a moment before tearing a piece free with a practiced shake of her head. The calf tried to imitate, nudging the slack arms of the squid, but only managed to tangle its mouth in the trailing suckers. The adults rumbled with what could only be described as laughter.

High above, a shaft of sunlight pierced the water, illuminating the drifting arms of the squid like banners in the deep. The feast had begun, but it was also a lesson—the calf’s first glimpse of the abyss’s hidden monsters, and of the power its mother carried up from the dark world below."

via: here and here

Thursday, October 9, 2025

Plastic-Eating Fungus

A fungus from the Amazon rainforest can break down polyurethane plastic without oxygen. It's the first organism discovered with this capability, and it can survive using plastic as its only food source.

Most plastic waste ends up deep in landfills where oxygen doesn't reach, precisely where this fungus thrives. Polyurethane persists for centuries in these environments. It's everywhere: mattresses, insulation foam, shoe soles, adhesives, car parts. Annual global plastic production exceeds 400 million tons. Less than 10% gets recycled.

Pestalotiopsis microspora was discovered in 2011 in Ecuador's Yasuní National Forest, isolated from plant stems. The endophytic fungus lives inside plant tissues without harming its host. Laboratory testing revealed its remarkable ability: it degrades plastic equally well with or without oxygen present.

The fungus secretes an enzyme that breaks apart the chemical bonds holding polyurethane together. In laboratory tests, concentrated enzyme extracts can completely break down polyurethane polymer in under an hour. The fungus also produces a second enzyme that degrades PET plastic, splitting it into simpler compounds the fungus then consumes as food.

What makes this significant? Other plastic-degrading organisms need oxygen to function. When tested without oxygen, fungi like Lasiodiplodia and Pleosporales slowed down or stopped working. P. microspora maintained the same performance. This ability to work without oxygen directly addresses the actual problem—plastic buried in oxygen-depleted landfill depths.

The enzyme production is adaptive. When the fungus grows in a basic environment with only plastic available, it ramps up enzyme output. These enzymes spread through the surrounding material, breaking down plastic well beyond where the fungus itself is growing. The enzyme breakdown converts long-lasting polymer into simple compounds the fungus uses as food.

This fungus offers a biological solution that works precisely where the problem exists, in oxygen-depleted landfills where an ever-increasing amount our plastic waste collects.

by Sam Knowlton, The Confluence |  Read more:
Image: uncredited
[ed. Always a good reason to preserve natural habitats - who knows what other plants have undiscovered special properties? See also: A fungus that eats polyurethane (Yale Magazine).]
***
AI Overview:
Q. How long does it take Pestalotiopsis microspora to eat plastic?

Pestalotiopsis microspora can degrade plastic in a matter of weeks to months, with experiments showing significant degradation in as little as two weeks and over 60% breakdown in six weeks under ideal conditions. The specific timeframe varies, with some sources noting a few months for complete digestion in certain projects.

Wednesday, October 8, 2025

Ask Not Why You Would Work in Biology, But Rather: Why Wouldn't You?

There’s a lot of essays that are implicitly centered around convincing people to work in biology. One consistent theme amongst them is that they all focus on how irresistibly interesting the whole subject is. Isn’t it fascinating that our mitochondria are potentially an endosymbiotic phenomenon that occurred millions of years ago? Isn’t it fascinating that the regulation of your genome can change throughout your life? Isn’t it fascinating that slime molds can solve mazes without neurons? Come and learn more about this strange and curious field! (...)

But I’d like to offer a different take on the matter. Yes, biology is very interesting, yes, biology is very hard to do well. Yet, it remains the only field that could do something of the utmost importance: prevent a urinary catheter from being shunted inside you in the upcoming future.

Being catheterized is not a big deal. It happens to literally tens of millions of people every single year [ed. Really? Just checked and it's true, at least for millions.]. There is nothing even mildly unique about the whole experience. And, you know, it may be some matter of privilege that you ever feel a catheter inside of you; the financially marginalized will simply soil themselves or die a very painful death from sepsis.

But when you are catheterized for the first time—since, make no mistake, there is a very high chance you will be if you hope to die of old age—you’ll almost certainly feel a sense of intense wrongness that it happens at all. The whole procedure is a few moments of blunt violence, invasiveness, that feels completely out of place in an age where we can edit genomes and send probes beyond the solar system. There may be times where you’ll be able to protect yourself from the vile mixture of pain and discomfort via general anesthesia, but a fairly high number of people undergo (repeated!) catheterization awake and aware, often gathering a slew of infections along the way. This is made far worse by the fact that the most likely time you are catheterized will be during your twilight years, when your brain has turned to soup and you’ve forgotten who your parents are and who you are and what this painful tube is doing in your urethra. If you aren’t aware of how urinary catheters work, there is a deflated balloon at the end of it, blown up once the tube is inside you. This balloon keeps the whole system uncomfortably stuck inside your bladder. So, you can fill in the details on how much violence a brain-damaged person can do to themselves in a position like this by simply yanking out the foreign material.

Optimizing for not having a urinary catheter being placed into you is quite a lofty goal. Are there any alternatives on the table? Not practical ones. Diapers don’t work if the entire bladder itself is dysfunctional, suprapubic tubes require making a hole into the bladder (and can also be torn out), and nerve stimulation devices require expensive, invasive surgery. And none of them will be relied upon for routine cases, where catheterization is the fastest, most reliable solution that exists. You won’t get the gentle alternatives because you won’t be in a position to ask for them. You’ll be post-operative, or delirious, or comatose, or simply too old and confused to advocate for something better.

This is an uncomfortable subject to discuss. But I think it’s worth level-setting with one another. Urinary catheterization is but one of the dozens of little procedures that both contributes to the nauseating amount of ambient human suffering that repeats over and over and over again across the entire medical system and is reasonably common enough that it will likely be inflicted upon you one day. And if catheterization doesn’t seem so bad, there are a range of other awful things that, statistically speaking, a reader has a decent chance of undergoing at some point: feeding tubes, pap smears, mechanical ventilation, and repeated colonoscopies are all candidates.

Moreover, keep in mind that all these are simply the solutions to help prevent something far more grotesque and painful from occurring! Worse things exist—cancer, Alzheimer’s, Crohn’s—but those have been talked about to death and feel a great deal more abstract than the relatively routine, but barbaric, medical procedures that occur millions of times per year.

How could this not be your life goal to work on? To reduce how awful maladies, and the awful solutions to those maladies, are? What else is there really? Better prediction markets? What are we talking about?

To be fair, most people go through their first few decades of life not completely cognizant how terrible modern medicine can be. But at some point you surely have to understand that you have been, thus far, lucky enough to have spent your entire life on the good side of medicine. In a very nice room, one in which every disease, condition, or malady had a very smart clinician on staff to immediately administer the cure. But one day, you’ll one day be shown glimpses of a far worse room, the bad side of medicine, ushered into an area of healthcare where nobody actually understands what is going on. (...)

I appreciate that many fields also demand this level of obedience to the ‘cause’, the same installation of ‘this is the only thing that matters!’. The energy, climate change, and artificial-intelligence sectors have similar do-or-die mission statements. But you know the main difference between those fields and biology?

In every other game, you can at least pretend the losers are going to be someone else, somewhere else in the world, happening to some poor schmuck who didn’t have your money or your foresight or your connections to do the Obviously Correct Thing. Instead, people hope to be a winner. A robot in my house to do my laundry, a plane that gets me from San Francisco to New York City in only an hour, an infinite movie generator so I can turn all my inner thoughts into reality. Wow! Capital-A Abundance beyond my wildest dreams! This is all well and good, but the unfortunate reality of the situation is that you will be a loser, an explicit loser, guaranteed to be a loser, in one specific game: biology. You will not escape being the butt of the joke here, because it will be you that betrays you, not the you who is reading this essay, but you, the you that cannot think, the you that has been shoddily shaped by the last several eons of evolution. Yes, others will also have their time underneath this harsh spotlight, but you will see your day in it too. (...)

Yes, things outside of biology are important too. Optimized supply chains matter, good marketing matters, and accurate securities risk assessments matter. Industries work together in weird ways. The people working on better short-form video and payroll startups and FAANGs are part of an economic engine that generates the immense taxable wealth required to fund the NIH grants. I know that the world runs on invisible glue.

Still, I can’t help but think that people’s priorities are enormously out of touch with what will actually matter most to their future selves. It feels as if people seem to have this mental model where medical progress simply happens. Like there’s some natural law of the universe that says “treatments improve by X% per year” and we’re all just passengers with a dumb grin on this predetermined trajectory. They see headlines about better FDA guidelines or CRISPR or immunotherapy or AI-accelerated protein folding and think, “Great, the authorities got it covered. By the time I need it, they’ll have figured it out.”. But that’s not how any of this works! Nobody has it covered! Medical progress happens because specific people chose to work on specific problems instead of doing something else with their finite time on Earth.

by Abhishaike Mahajan, Owl Posting |  Read more:
Image: uncredited
[ed. Just can't comprehend the thinking recently for cutting essential NIH and NSF research funding (and others like NOAA). We used to lead the world.]

Tuesday, October 7, 2025

Do Coconuts Go With Oysters? For Saving the Delaware Shore, Yes.

For the past 50 years, Gary Berti has watched as a stretch of Delaware’s coastline slowly disappeared. Rising tides stripped the shoreline, leaving behind mud and a few tree stumps.

“Year after year, it gradually went from wild to deteriorated,” said Mr. Berti, whose parents moved to Angola by the Bay, a private community in Lewes, Del., in 1977, where he now lives with his wife, Debbie.

But in 2023, an extensive restoration effort converted a half-mile of shoreline from barren to verdant. A perimeter of logs and rolls of coconut husk held new sand in place. Lush beds of spartina, commonly known as cordgrass, grew, inviting wading birds and blue crabs.

Together, these elements have created a living shoreline, a nature-based way of stabilizing the coast, to absorb energy from the waves and protect the land from washing away. 

Mr. Berti had never seen the waterfront like this before. “The change has just been spectacular,” he said.

Before
After

The practice of using natural materials to prevent erosion has been around for decades. But as sea levels rise and ever-intensifying storms pound coastlines, more places are building them.

The U.S. government counts at least 150 living shorelines nationwide, with East Coast states like Maryland, South Carolina and Florida remediating thousands of feet of tidal areas. Thanks to the efforts of the Delaware Living Shorelines Committee, a state-supported working group, Delaware has led the charge for years. (...)

“The living component is key,” said Alison Rogerson, an environmental scientist for the state’s natural resources department and chair of the living shoreline committee.

The natural materials, she said, provide a permeable buffer. As waves pass through, they leave the mud and sand they were carrying on the side of the barrier closer to the shore. This sediment builds up over time, creating a stable surface for plants. As the plants grow, their roots reinforce the barrier by holding everything in place. The goal is not necessarily return the land to how it was before, but to create new, stronger habitat.

More traditional rigid structures, like concrete sea walls, steel bulkheads and piles of stone known as riprap, can provide instant protection but inevitably get weaker over time. Bulkheads can also backfire by eroding at the base or trapping floodwaters from storms. And because hardened structures are designed to deflect energy, not absorb it, they can actually worsen erosion in nearby areas.

Though living shorelines need initial care while they start to grow, scientists have found they can outperform rigid structures in storms and can repair themselves naturally. And as sea levels rise, living shorelines naturally inch inland with the coastline, providing continuous protection, whereas sea walls have to be rebuilt.

When the engineers leave after creating a gray rigid structure, like a sea wall, “that’s the strongest that structure is ever going to be, and at some point, it will fail,” said David Burdick, an associate professor of coastal ecology at the University of New Hampshire. “When we install living shorelines, it’s the weakest it’s going to be. And it will get stronger over time.”

And just as coastal areas come in all shapes and sizes, so do living shorelines. In other places that the committee has supported projects, like Angola by the Bay and the Delaware Botanical Garden, brackish water meant that oysters wouldn’t grow. Instead, the private community opted for large timber logs while the botanical garden built a unique crisscross fence from dead tree branches found on site. (...)

Sometimes, an area’s waves and wind are too powerful for a living shoreline to survive on its own, Mr. Janiec said. In these situations, a hybrid approach that combines hard structures can create a protected zone for plants and oysters to grow. And these don’t need to be traditional sea walls or riprap. Scientists can also use concrete reef structures and oyster castles to break up waves while allowing wildlife to thrive.

Gregg Moore, an associate professor of coastal restoration at the University of New Hampshire, said homeowners often choose rigid structures because they don’t act on erosion until the situation is urgent. When it comes to a person’s home, “you can’t blame somebody for wanting to put whatever they think is the fastest, most permanent solution possible,” he said. (...)

“Living shorelines are easier than people think, but they take a little time,” Mrs. Allread said. “You have to trust the process. Nature can do its own thing if you let it.”

by Sachi Kitajima Mulkey, NY Times |  Read more:
Images: Erin Schaff
[ed. Streambank and coastal restoration/rehabilitation using bioengineering techniques has been standard practice in Alaska for decades (in fact, my former gf wrote the book on it - literally). I myself received a grant to rehabilitate 12 state park public use sites on the Kenai River (see here and here) that were heavily damaged and eroding from constant foot traffic and boat wakes. Won a National Coastal America Award for innovation. As noted here, most people want a quick fix, but this is a better, long-term solution.]